J3_8UJD_025

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8UJD|1|L5|U|4989, 8UJD|1|L5|C|4990, 8UJD|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJD|1|L5|C|4970
8UJD|1|L5|A|4971
8UJD|1|L5|U|4972
*
8UJD|1|L5|G|4986
8UJD|1|L5|C|4987
8UJD|1|L5|U|4988
8UJD|1|L5|U|4989
8UJD|1|L5|C|4990
8UJD|1|L5|U|4991
*
8UJD|1|L5|A|5060
8UJD|1|L5|A|5061
8UJD|1|L5|G|5062
8UJD|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31