J3_8UJJ_014

3D structure

PDB id

8UJJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

AGAUGG*CGUUCCGAAGGG*CGGCCGAU

Length

26 nucleotides

Bulged bases

8UJJ|1|L5|C|2470, 8UJJ|1|L5|A|2472, 8UJJ|1|L5|G|2475, 8UJJ|1|L5|G|2503, 8UJJ|1|L5|C|2504, 8UJJ|1|L5|C|2505

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UJJ_014 not in the Motif Atlas

Homologous match to J3_8CRE_016

Geometric discrepancy: 0.5931

The information below is about J3_8CRE_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65403.1

Basepair signature

cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8UJJ|1|L5|A|2451
8UJJ|1|L5|G|2452
8UJJ|1|L5|A|2453
8UJJ|1|L5|U|2454
8UJJ|1|L5|G|2455
8UJJ|1|L5|G|2456
*
8UJJ|1|L5|C|2465
8UJJ|1|L5|G|2466
8UJJ|1|L5|U|2467
8UJJ|1|L5|U|2468
8UJJ|1|L5|C|2469
8UJJ|1|L5|C|2470
8UJJ|1|L5|G|2471
8UJJ|1|L5|A|2472
8UJJ|1|L5|A|2473
8UJJ|1|L5|G|2474
8UJJ|1|L5|G|2475
8UJJ|1|L5|G|2476
*
8UJJ|1|L5|C|2501
8UJJ|1|L5|G|2502
8UJJ|1|L5|G|2503
8UJJ|1|L5|C|2504
8UJJ|1|L5|C|2505
8UJJ|1|L5|G|2506
8UJJ|1|L5|A|2507
8UJJ|1|L5|U|2508

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15

Chain LX

60S ribosomal protein L23a

Chain Lj

60S ribosomal protein L37