J3_8UJK_005

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8UJK|1|L5|C|704, 8UJK|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|451
8UJK|1|L5|A|452
8UJK|1|L5|G|453
8UJK|1|L5|U|454
8UJK|1|L5|C|455
*
8UJK|1|L5|G|701
8UJK|1|L5|U|702
8UJK|1|L5|G|703
8UJK|1|L5|C|704
8UJK|1|L5|G|705
*
8UJK|1|L5|C|1292
8UJK|1|L5|G|1293
8UJK|1|L5|A|1294
8UJK|1|L5|C|1295
8UJK|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a