J3_8UJK_006

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8UJK|1|L5|G|959, 8UJK|1|L5|C|962, 8UJK|1|L5|G|965, 8UJK|1|L5|C|967, 8UJK|1|L5|U|971, 8UJK|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|712
8UJK|1|L5|C|713
*
8UJK|1|L5|G|955
8UJK|1|L5|A|956
8UJK|1|L5|G|957
8UJK|1|L5|G|958
8UJK|1|L5|G|959
8UJK|1|L5|A|960
8UJK|1|L5|G|961
8UJK|1|L5|C|962
8UJK|1|L5|G|963
8UJK|1|L5|A|964
8UJK|1|L5|G|965
8UJK|1|L5|A|966
8UJK|1|L5|C|967
8UJK|1|L5|C|968
8UJK|1|L5|C|969
8UJK|1|L5|G|970
8UJK|1|L5|U|971
8UJK|1|L5|C|972
8UJK|1|L5|G|973
8UJK|1|L5|C|974
8UJK|1|L5|C|975
8UJK|1|L5|G|976
*
8UJK|1|L5|C|1278
8UJK|1|L5|A|1279
8UJK|1|L5|C|1280
8UJK|1|L5|G|1281
8UJK|1|L5|G|1282
8UJK|1|L5|G|1283
8UJK|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32