3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
8UJK|1|L5|A|1534, 8UJK|1|L5|G|1641, 8UJK|1|L5|A|1642
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UJK_007 not in the Motif Atlas
Homologous match to J3_8CRE_009
Geometric discrepancy: 0.0694
The information below is about J3_8CRE_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64189.2
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

8UJK|1|L5|U|1531
8UJK|1|L5|G|1532
8UJK|1|L5|A|1533
8UJK|1|L5|A|1534
8UJK|1|L5|C|1535
8UJK|1|L5|U|1536
8UJK|1|L5|A|1537
*
8UJK|1|L5|U|1622
8UJK|1|L5|A|1623
8UJK|1|L5|G|1624
*
8UJK|1|L5|C|1640
8UJK|1|L5|G|1641
8UJK|1|L5|A|1642
8UJK|1|L5|A|1643

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LA
60S ribosomal protein L8
Chain LN
60S ribosomal protein L15
Chain Lj
60S ribosomal protein L37
Chain Ll
60S ribosomal protein L39

Coloring options:


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