J3_8UJK_010

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GAC*GCUAAGG*CACC

Length

14 nucleotides

Bulged bases

8UJK|1|L5|U|1997, 8UJK|1|L5|A|1998

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|G|1969
8UJK|1|L5|A|1970
8UJK|1|L5|C|1971
*
8UJK|1|L5|G|1995
8UJK|1|L5|C|1996
8UJK|1|L5|U|1997
8UJK|1|L5|A|1998
8UJK|1|L5|A|1999
8UJK|1|L5|G|2000
8UJK|1|L5|G|2001
*
8UJK|1|L5|C|2016
8UJK|1|L5|A|2017
8UJK|1|L5|C|2018
8UJK|1|L5|C|2019

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

Large ribosomal subunit protein uL11