3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
AGAUG*CAGU*AGGGUGUAAAU
Length
20 nucleotides
Bulged bases
8UJK|1|L5|U|2763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJK|1|L5|A|2551
8UJK|1|L5|G|2552
8UJK|1|L5|A|2553
8UJK|1|L5|U|2554
8UJK|1|L5|G|2555
*
8UJK|1|L5|C|2572
8UJK|1|L5|A|2573
8UJK|1|L5|G|2574
8UJK|1|L5|U|2575
*
8UJK|1|L5|A|2757
8UJK|1|L5|G|2758
8UJK|1|L5|G|2759
8UJK|1|L5|G|2760
8UJK|1|L5|U|2761
8UJK|1|L5|G|2762
8UJK|1|L5|U|2763
8UJK|1|L5|A|2764
8UJK|1|L5|A|2765
8UJK|1|L5|A|2766
8UJK|1|L5|U|2767

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LZ
60S ribosomal protein L27

Coloring options:

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