J3_8UJK_024

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

CAUUCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

8UJK|1|L5|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UJK|1|L5|C|4970
8UJK|1|L5|A|4971
8UJK|1|L5|U|4972
8UJK|1|L5|U|4973
8UJK|1|L5|C|4974
8UJK|1|L5|G|4975
*
8UJK|1|L5|C|4983
8UJK|1|L5|C|4984
8UJK|1|L5|U|4985
8UJK|1|L5|G|4986
8UJK|1|L5|C|4987
8UJK|1|L5|U|4988
8UJK|1|L5|U|4989
8UJK|1|L5|C|4990
8UJK|1|L5|U|4991
*
8UJK|1|L5|A|5060
8UJK|1|L5|A|5061
8UJK|1|L5|G|5062
8UJK|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31