3D structure

PDB id
8UJK (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ HHT and CHX treated A-P-Z state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.54 Å

Loop

Sequence
CUGGC*GGACAAG*CCCGAGAUUG
Length
22 nucleotides
Bulged bases
8UJK|1|S2|U|1477
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UJK|1|S2|C|1391
8UJK|1|S2|U|1392
8UJK|1|S2|G|1393
8UJK|1|S2|G|1394
8UJK|1|S2|C|1395
*
8UJK|1|S2|G|1450
8UJK|1|S2|G|1451
8UJK|1|S2|A|1452
8UJK|1|S2|C|1453
8UJK|1|S2|A|1454
8UJK|1|S2|A|1455
8UJK|1|S2|G|1456
*
8UJK|1|S2|C|1470
8UJK|1|S2|C|1471
8UJK|1|S2|C|1472
8UJK|1|S2|G|1473
8UJK|1|S2|A|1474
8UJK|1|S2|G|1475
8UJK|1|S2|A|1476
8UJK|1|S2|U|1477
8UJK|1|S2|U|1478
8UJK|1|S2|G|1479

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SD
Small ribosomal subunit protein uS3
Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29
Chain Sg
Receptor of activated protein C kinase 1

Coloring options:

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