J3_8UKB_002

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8UKB|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|L5|C|196
8UKB|1|L5|A|197
8UKB|1|L5|A|198
8UKB|1|L5|G|199
*
8UKB|1|L5|C|215
8UKB|1|L5|C|216
8UKB|1|L5|C|217
8UKB|1|L5|A|218
8UKB|1|L5|G|219
8UKB|1|L5|C|220
8UKB|1|L5|C|221
8UKB|1|L5|C|222
8UKB|1|L5|G|223
8UKB|1|L5|U|224
8UKB|1|L5|G|225
8UKB|1|L5|G|226
8UKB|1|L5|A|227
8UKB|1|L5|C|228
*
8UKB|1|L5|G|240
8UKB|1|L5|G|241
8UKB|1|L5|U|242
8UKB|1|L5|A|243
8UKB|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26