J3_8UKB_007

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8UKB|1|L5|G|959, 8UKB|1|L5|C|962, 8UKB|1|L5|G|965, 8UKB|1|L5|C|967, 8UKB|1|L5|C|968, 8UKB|1|L5|C|969, 8UKB|1|L5|U|971, 8UKB|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|L5|C|712
8UKB|1|L5|C|713
*
8UKB|1|L5|G|955
8UKB|1|L5|A|956
8UKB|1|L5|G|957
8UKB|1|L5|G|958
8UKB|1|L5|G|959
8UKB|1|L5|A|960
8UKB|1|L5|G|961
8UKB|1|L5|C|962
8UKB|1|L5|G|963
8UKB|1|L5|A|964
8UKB|1|L5|G|965
8UKB|1|L5|A|966
8UKB|1|L5|C|967
8UKB|1|L5|C|968
8UKB|1|L5|C|969
8UKB|1|L5|G|970
8UKB|1|L5|U|971
8UKB|1|L5|C|972
8UKB|1|L5|G|973
8UKB|1|L5|C|974
8UKB|1|L5|C|975
8UKB|1|L5|G|976
*
8UKB|1|L5|C|1278
8UKB|1|L5|A|1279
8UKB|1|L5|C|1280
8UKB|1|L5|G|1281
8UKB|1|L5|G|1282
8UKB|1|L5|G|1283
8UKB|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32