J3_8UKB_016

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8UKB|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|L5|A|2551
8UKB|1|L5|G|2552
8UKB|1|L5|A|2553
8UKB|1|L5|U|2554
8UKB|1|L5|G|2555
*
8UKB|1|L5|C|2572
8UKB|1|L5|A|2573
8UKB|1|L5|G|2574
8UKB|1|L5|U|2575
*
8UKB|1|L5|A|2757
8UKB|1|L5|G|2758
8UKB|1|L5|G|2759
8UKB|1|L5|G|2760
8UKB|1|L5|U|2761
8UKB|1|L5|G|2762
8UKB|1|L5|U|2763
8UKB|1|L5|A|2764
8UKB|1|L5|A|2765
8UKB|1|L5|A|2766
8UKB|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27