J3_8UKB_024

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8UKB|1|L5|U|4882, 8UKB|1|L5|A|4938, 8UKB|1|L5|C|4940, 8UKB|1|L5|A|4943, 8UKB|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UKB|1|L5|G|4751
8UKB|1|L5|U|4752
8UKB|1|L5|U|4753
8UKB|1|L5|G|4754
*
8UKB|1|L5|C|4879
8UKB|1|L5|C|4880
8UKB|1|L5|U|4881
8UKB|1|L5|U|4882
8UKB|1|L5|C|4883
*
8UKB|1|L5|G|4936
8UKB|1|L5|C|4937
8UKB|1|L5|A|4938
8UKB|1|L5|C|4939
8UKB|1|L5|C|4940
8UKB|1|L5|G|4941
8UKB|1|L5|C|4942
8UKB|1|L5|A|4943
8UKB|1|L5|C|4944
8UKB|1|L5|G|4945
8UKB|1|L5|U|4946
8UKB|1|L5|U|4947
8UKB|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a