J3_8UQL_019
3D structure
- PDB id
- 8UQL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8UQL|1|d|U|14, 8UQL|1|d|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UQL_019 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.1058
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8UQL|1|d|G|10
8UQL|1|d|C|11
8UQL|1|d|C|12
8UQL|1|d|G|13
8UQL|1|d|U|14
8UQL|1|d|A|15
8UQL|1|d|G|16
*
8UQL|1|d|C|68
8UQL|1|d|G|69
8UQL|1|d|C|70
*
8UQL|1|d|G|106
8UQL|1|d|G|107
8UQL|1|d|A|108
8UQL|1|d|A|109
8UQL|1|d|C|110
Current chains
- Chain d
- 5S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L25
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain b
- 50S ribosomal protein L27
- Chain x
- 50S ribosomal protein L18
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