3D structure

PDB id
8UQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
8UQL|1|a|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UQL_033 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.0502
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

8UQL|1|a|G|297
8UQL|1|a|G|298
8UQL|1|a|A|299
8UQL|1|a|A|300
8UQL|1|a|G|301
*
8UQL|1|a|C|316
8UQL|1|a|G|317
8UQL|1|a|C|318
8UQL|1|a|G|319
8UQL|1|a|A|320
8UQL|1|a|U|321
8UQL|1|a|A|322
8UQL|1|a|C|323
8UQL|1|a|A|324
8UQL|1|a|G|325
*
8UQL|1|a|C|337
8UQL|1|a|G|338
8UQL|1|a|U|339
8UQL|1|a|A|340
8UQL|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24
Chain l
50S ribosomal protein L4

Coloring options:


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