J3_8UQP_016
3D structure
- PDB id
- 8UQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 8UQP|1|a|U|2334
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UQP_016 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.1816
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
8UQP|1|a|C|2295
8UQP|1|a|U|2296
8UQP|1|a|A|2297
8UQP|1|a|A|2298
8UQP|1|a|U|2299
*
8UQP|1|a|A|2317
8UQP|1|a|G|2318
8UQP|1|a|G|2319
8UQP|1|a|U|2320
8UQP|1|a|U|2321
8UQP|1|a|A|2322
8UQP|1|a|G|2323
*
8UQP|1|a|C|2332
8UQP|1|a|A|2333
8UQP|1|a|U|2334
8UQP|1|a|A|2335
8UQP|1|a|A|2336
8UQP|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 50S ribosomal protein L27
- Chain d
- 5S ribosomal RNA; 5S rRNA
- Chain n
- 50S ribosomal protein L5
- Chain x
- 50S ribosomal protein L18
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