J3_8UQP_017

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

8UQP|1|a|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQP_017 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0638

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8UQP|1|a|C|2517
8UQP|1|a|A|2518
8UQP|1|a|U|2519
8UQP|1|a|C|2520
*
8UQP|1|a|G|2545
8UQP|1|a|U|2546
8UQP|1|a|A|2547
*
8UQP|1|a|U|2561
8UQP|1|a|U|2562
8UQP|1|a|U|2563
8UQP|1|a|A|2564
8UQP|1|a|A|2565
8UQP|1|a|A|2566
8UQP|1|a|G|2567

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L3

Chain t

50S ribosomal protein L14