J3_8UQP_033

3D structure

PDB id

8UQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8UQP|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UQP_033 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0502

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8UQP|1|a|G|297
8UQP|1|a|G|298
8UQP|1|a|A|299
8UQP|1|a|A|300
8UQP|1|a|G|301
*
8UQP|1|a|C|316
8UQP|1|a|G|317
8UQP|1|a|C|318
8UQP|1|a|G|319
8UQP|1|a|A|320
8UQP|1|a|U|321
8UQP|1|a|A|322
8UQP|1|a|C|323
8UQP|1|a|A|324
8UQP|1|a|G|325
*
8UQP|1|a|C|337
8UQP|1|a|G|338
8UQP|1|a|U|339
8UQP|1|a|A|340
8UQP|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4