3D structure

PDB id
8URM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) bound to slippery P-site CCC-C codon and tRNAVal(UAC) in the A site
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8URM_019 not in the Motif Atlas
Geometric match to J3_4LFB_010
Geometric discrepancy: 0.1608
The information below is about J3_4LFB_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_58657.1
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8URM|1|2|G|46
8URM|1|2|C|47
*
8URM|1|2|G|361
8URM|1|2|G|362
8URM|1|2|A|363
8URM|1|2|A|364
8URM|1|2|U|365
8URM|1|2|A|366
8URM|1|2|U|367
*
8URM|1|2|A|393
8URM|1|2|G|394
8URM|1|2|C|395

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain q
Small ribosomal subunit protein uS12
Chain u
30S ribosomal protein S16

Coloring options:


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