J3_8UTI_018

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAG*UGAU

Length

25 nucleotides

Bulged bases

8UTI|1|A|G|2549, 8UTI|1|A|U|2550, 8UTI|1|A|U|2551, 8UTI|1|A|C|2552, 8UTI|1|A|U|2553, 8UTI|1|A|A|2554, 8UTI|1|A|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTI_018 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.1422

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

8UTI|1|A|A|2529
8UTI|1|A|G|2530
8UTI|1|A|C|2531
8UTI|1|A|U|2532
*
8UTI|1|A|A|2547
8UTI|1|A|C|2548
8UTI|1|A|G|2549
8UTI|1|A|U|2550
8UTI|1|A|U|2551
8UTI|1|A|C|2552
8UTI|1|A|U|2553
8UTI|1|A|A|2554
8UTI|1|A|G|2555
8UTI|1|A|C|2556
8UTI|1|A|A|2557
8UTI|1|A|U|2558
8UTI|1|A|U|2559
8UTI|1|A|C|2560
8UTI|1|A|A|2561
8UTI|1|A|A|2562
8UTI|1|A|G|2563
*
8UTI|1|A|U|2578
8UTI|1|A|G|2579
8UTI|1|A|A|2580
8UTI|1|A|U|2581

Current chains

Chain A

25S rRNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain LJ

60S ribosomal protein L8-A

Chain LZ

60S ribosomal protein L25

Chain Lb

60S ribosomal protein L27-A

Chain Le

60S ribosomal protein L30

Chain Li

60S ribosomal protein L34-A

Chain Lr

60S ribosomal protein L43-A