J3_8UTI_029

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UTI_029 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1273

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8UTI|1|E|A|760
8UTI|1|E|G|761
8UTI|1|E|A|762
8UTI|1|E|G|763
*
8UTI|1|E|C|773
8UTI|1|E|A|774
8UTI|1|E|G|775
*
8UTI|1|E|U|785
8UTI|1|E|C|786
8UTI|1|E|G|787
8UTI|1|E|A|788
8UTI|1|E|A|789
8UTI|1|E|U|790

Current chains

Chain E

18S rRNA

Nearby chains

Chain SS

40S ribosomal protein S4-A

Chain SW

40S ribosomal protein S9-A

Chain Sd

40S ribosomal protein S24-A