J3_8UU4_002

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

8UU4|1|A|U|732, 8UU4|1|A|G|838, 8UU4|1|A|A|839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU4_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.07

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8UU4|1|A|U|729
8UU4|1|A|G|730
8UU4|1|A|A|731
8UU4|1|A|U|732
8UU4|1|A|C|733
8UU4|1|A|U|734
8UU4|1|A|A|735
*
8UU4|1|A|U|819
8UU4|1|A|A|820
8UU4|1|A|G|821
*
8UU4|1|A|C|837
8UU4|1|A|G|838
8UU4|1|A|A|839
8UU4|1|A|A|840

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL34

Chain C

Large ribosomal subunit protein uL2