3D structure

PDB id
8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU4_003 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0694
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8UU4|1|A|C|744
8UU4|1|A|A|745
8UU4|1|A|G|746
*
8UU4|1|A|C|778
8UU4|1|A|G|779
8UU4|1|A|A|780
8UU4|1|A|A|781
8UU4|1|A|C|782
*
8UU4|1|A|G|806
8UU4|1|A|A|807
8UU4|1|A|U|808
8UU4|1|A|G|809

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2

Coloring options:


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