J3_8UU4_014
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8UU4|1|a|A|984, 8UU4|1|a|G|985, 8UU4|1|a|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_014 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1058
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|a|U|964
8UU4|1|a|U|965
8UU4|1|a|U|966
8UU4|1|a|A|967
8UU4|1|a|A|968
8UU4|1|a|U|969
8UU4|1|a|U|970
8UU4|1|a|C|971
*
8UU4|1|a|G|982
8UU4|1|a|A|983
8UU4|1|a|A|984
8UU4|1|a|G|985
8UU4|1|a|A|986
8UU4|1|a|A|987
8UU4|1|a|C|988
8UU4|1|a|C|989
8UU4|1|a|U|990
8UU4|1|a|U|991
8UU4|1|a|A|992
8UU4|1|a|C|993
*
8UU4|1|a|G|1228
8UU4|1|a|G|1229
8UU4|1|a|C|1230
8UU4|1|a|U|1231
8UU4|1|a|A|1232
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
- Chain w
- Ribosome hibernation promoting factor
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