J3_8UU4_027
3D structure
- PDB id
- 8UU4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCC*GCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8UU4|1|A|U|2423, 8UU4|1|A|A|2459
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU4_027 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.122
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UU4|1|A|G|2315
8UU4|1|A|C|2316
8UU4|1|A|C|2317
*
8UU4|1|A|G|2417
8UU4|1|A|C|2418
8UU4|1|A|U|2419
8UU4|1|A|U|2420
8UU4|1|A|A|2421
8UU4|1|A|G|2422
8UU4|1|A|U|2423
8UU4|1|A|G|2424
8UU4|1|A|A|2425
8UU4|1|A|U|2426
8UU4|1|A|C|2427
8UU4|1|A|C|2428
*
8UU4|1|A|G|2454
8UU4|1|A|C|2455
8UU4|1|A|U|2456
8UU4|1|A|C|2457
8UU4|1|A|A|2458
8UU4|1|A|A|2459
8UU4|1|A|C|2460
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain N
- Large ribosomal subunit protein uL15
- Chain Y
- Large ribosomal subunit protein bL27
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