J3_8UU4_037

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACCACU*AGCUUUCC*GGAC

Length

19 nucleotides

Bulged bases

8UU4|1|a|U|1034

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU4|1|a|G|1012
8UU4|1|a|A|1013
8UU4|1|a|C|1014
8UU4|1|a|C|1015
8UU4|1|a|A|1016
8UU4|1|a|C|1017
8UU4|1|a|U|1018
*
8UU4|1|a|A|1029
8UU4|1|a|G|1030
8UU4|1|a|C|1031
8UU4|1|a|U|1032
8UU4|1|a|U|1033
8UU4|1|a|U|1034
8UU4|1|a|C|1035
8UU4|1|a|C|1036
*
8UU4|1|a|G|1043
8UU4|1|a|G|1044
8UU4|1|a|A|1045
8UU4|1|a|C|1046

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain c

Small ribosomal subunit protein uS3