3D structure

PDB id
8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCUA
Length
25 nucleotides
Bulged bases
8UU5|1|a|A|984, 8UU5|1|a|G|985, 8UU5|1|a|A|987
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU5_014 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0858
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8UU5|1|a|U|964
8UU5|1|a|U|965
8UU5|1|a|U|966
8UU5|1|a|A|967
8UU5|1|a|A|968
8UU5|1|a|U|969
8UU5|1|a|U|970
8UU5|1|a|C|971
*
8UU5|1|a|G|982
8UU5|1|a|A|983
8UU5|1|a|A|984
8UU5|1|a|G|985
8UU5|1|a|A|986
8UU5|1|a|A|987
8UU5|1|a|C|988
8UU5|1|a|C|989
8UU5|1|a|U|990
8UU5|1|a|U|991
8UU5|1|a|A|992
8UU5|1|a|C|993
*
8UU5|1|a|G|1228
8UU5|1|a|G|1229
8UU5|1|a|C|1230
8UU5|1|a|U|1231
8UU5|1|a|A|1232

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain j
Small ribosomal subunit protein uS10
Chain m
Small ribosomal subunit protein uS13
Chain n
Small ribosomal subunit protein uS14
Chain s
Small ribosomal subunit protein uS19

Coloring options:


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