J3_8UU5_036

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

8UU5|1|a|U|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU5_036 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1314

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8UU5|1|a|C|999
8UU5|1|a|U|1000
8UU5|1|a|U|1001
8UU5|1|a|G|1002
8UU5|1|a|A|1003
8UU5|1|a|C|1004
8UU5|1|a|A|1005
8UU5|1|a|U|1006
*
8UU5|1|a|A|1053
8UU5|1|a|C|1054
8UU5|1|a|A|1055
8UU5|1|a|G|1056
*
8UU5|1|a|C|1217
8UU5|1|a|U|1218
8UU5|1|a|U|1219
8UU5|1|a|A|1220
8UU5|1|a|U|1221
8UU5|1|a|G|1222

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14