J3_8UU5_039
3D structure
- PDB id
- 8UU5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8UU5|1|a|U|1190
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU5_039 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1276
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UU5|1|a|U|1125
8UU5|1|a|G|1126
8UU5|1|a|A|1127
*
8UU5|1|a|U|1163
8UU5|1|a|G|1164
8UU5|1|a|A|1165
8UU5|1|a|C|1166
8UU5|1|a|U|1167
8UU5|1|a|G|1168
8UU5|1|a|C|1169
*
8UU5|1|a|G|1182
8UU5|1|a|A|1183
8UU5|1|a|G|1184
8UU5|1|a|G|1185
8UU5|1|a|A|1186
8UU5|1|a|A|1187
8UU5|1|a|G|1188
8UU5|1|a|G|1189
8UU5|1|a|U|1190
8UU5|1|a|G|1191
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS2
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
- Chain j
- Small ribosomal subunit protein uS10
- Chain n
- Small ribosomal subunit protein uS14
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