3D structure

PDB id
8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
ACGGGACUAACA*UGC*GAUUU
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UU6_001 not in the Motif Atlas
Homologous match to J3_4WF9_001
Geometric discrepancy: 0.1609
The information below is about J3_4WF9_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47707.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
Number of instances in this motif group
1

Unit IDs

8UU6|1|A|A|56
8UU6|1|A|C|57
8UU6|1|A|G|58
8UU6|1|A|G|59
8UU6|1|A|G|60
8UU6|1|A|A|61
8UU6|1|A|C|62
8UU6|1|A|U|63
8UU6|1|A|A|64
8UU6|1|A|A|65
8UU6|1|A|C|66
8UU6|1|A|A|67
*
8UU6|1|A|U|74
8UU6|1|A|G|75
8UU6|1|A|C|76
*
8UU6|1|A|G|109
8UU6|1|A|A|110
8UU6|1|A|U|111
8UU6|1|A|U|112
8UU6|1|A|U|113

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain 1
Large ribosomal subunit protein uL29
Chain 6
Large ribosomal subunit protein bL34
Chain V
Large ribosomal subunit protein uL23

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