J3_8UU6_008

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGG*CUAACC*GAGACAG

Length

16 nucleotides

Bulged bases

8UU6|1|A|A|2231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU6_008 not in the Motif Atlas

Homologous match to J3_4WF9_007

Geometric discrepancy: 0.156

The information below is about J3_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07703.1

Basepair signature

cWW-cWW-tSH-F-F-F-F-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8UU6|1|A|U|2124
8UU6|1|A|G|2125
8UU6|1|A|G|2126
*
8UU6|1|A|C|2229
8UU6|1|A|U|2230
8UU6|1|A|A|2231
8UU6|1|A|A|2232
8UU6|1|A|C|2233
8UU6|1|A|C|2234
*
8UU6|1|A|G|2255
8UU6|1|A|A|2256
8UU6|1|A|G|2257
8UU6|1|A|A|2258
8UU6|1|A|C|2259
8UU6|1|A|A|2260
8UU6|1|A|G|2261

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain Z

Large ribosomal subunit protein bL28