J3_8UU6_025

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGACA*UC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU6_025 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2268

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8UU6|1|A|U|1475
8UU6|1|A|G|1476
8UU6|1|A|A|1477
8UU6|1|A|C|1478
8UU6|1|A|A|1479
*
8UU6|1|A|U|1616
8UU6|1|A|C|1617
*
8UU6|1|A|G|1620
8UU6|1|A|A|1621
8UU6|1|A|A|1622
8UU6|1|A|A|1623
8UU6|1|A|A|1624
8UU6|1|A|G|1625

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2