J3_8UU6_033
3D structure
- PDB id
- 8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU6_033 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.1033
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
8UU6|1|a|C|945
8UU6|1|a|A|946
8UU6|1|a|A|947
8UU6|1|a|G|948
*
8UU6|1|a|C|1351
8UU6|1|a|U|1352
8UU6|1|a|A|1353
8UU6|1|a|G|1354
8UU6|1|a|U|1355
8UU6|1|a|A|1356
8UU6|1|a|A|1357
*
8UU6|1|a|U|1379
8UU6|1|a|G|1380
8UU6|1|a|A|1381
8UU6|1|a|A|1382
8UU6|1|a|U|1383
8UU6|1|a|A|1384
8UU6|1|a|C|1385
8UU6|1|a|G|1386
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain g
- Small ribosomal subunit protein uS7
- Chain i
- Small ribosomal subunit protein uS9
Coloring options: