J3_8UU6_035
3D structure
- PDB id
- 8UU6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UU6_035 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.2565
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UU6|1|a|U|1082
8UU6|1|a|G|1083
*
8UU6|1|a|U|1092
8UU6|1|a|G|1093
8UU6|1|a|U|1094
8UU6|1|a|U|1095
8UU6|1|a|G|1096
*
8UU6|1|a|C|1107
8UU6|1|a|G|1108
8UU6|1|a|C|1109
8UU6|1|a|A|1110
8UU6|1|a|A|1111
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain b
- Small ribosomal subunit protein uS2
- Chain e
- Small ribosomal subunit protein uS5
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