J3_8UU7_019

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU7_019 not in the Motif Atlas

Geometric match to J3_4WF9_010

Geometric discrepancy: 0.1301

The information below is about J3_4WF9_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8UU7|1|A|G|30
8UU7|1|A|C|31
*
8UU7|1|A|G|520
8UU7|1|A|U|521
8UU7|1|A|G|522
8UU7|1|A|A|523
8UU7|1|A|A|524
8UU7|1|A|A|525
8UU7|1|A|A|526
8UU7|1|A|G|527
*
8UU7|1|A|C|554
8UU7|1|A|C|555

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20

Chain W

Large ribosomal subunit protein uL24