J3_8UU9_037

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

8UU9|1|a|U|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_037 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1704

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8UU9|1|a|C|999
8UU9|1|a|U|1000
8UU9|1|a|U|1001
8UU9|1|a|G|1002
8UU9|1|a|A|1003
8UU9|1|a|C|1004
8UU9|1|a|A|1005
8UU9|1|a|U|1006
*
8UU9|1|a|A|1053
8UU9|1|a|C|1054
8UU9|1|a|A|1055
8UU9|1|a|G|1056
*
8UU9|1|a|C|1217
8UU9|1|a|U|1218
8UU9|1|a|U|1219
8UU9|1|a|A|1220
8UU9|1|a|U|1221
8UU9|1|a|G|1222

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain n

Small ribosomal subunit protein uS14