J3_8UU9_038

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UU9_038 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1831

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UU9|1|a|U|1082
8UU9|1|a|G|1083
*
8UU9|1|a|U|1092
8UU9|1|a|G|1093
8UU9|1|a|U|1094
8UU9|1|a|U|1095
8UU9|1|a|G|1096
*
8UU9|1|a|C|1107
8UU9|1|a|G|1108
8UU9|1|a|C|1109
8UU9|1|a|A|1110
8UU9|1|a|A|1111

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS2

Chain e

Small ribosomal subunit protein uS5