J3_8UVR_053
3D structure
- PDB id
- 8UVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 8UVR|1|1a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UVR_053 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1227
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8UVR|1|1a|C|1116
8UVR|1|1a|G|1117
8UVR|1|1a|C|1118
*
8UVR|1|1a|G|1155
8UVR|1|1a|G|1156
8UVR|1|1a|A|1157
8UVR|1|1a|C|1158
8UVR|1|1a|U|1159
8UVR|1|1a|G|1160
8UVR|1|1a|C|1161
*
8UVR|1|1a|G|1175
8UVR|1|1a|A|1176
8UVR|1|1a|G|1177
8UVR|1|1a|G|1178
8UVR|1|1a|A|1179
8UVR|1|1a|A|1180
8UVR|1|1a|G|1181
8UVR|1|1a|G|1182
8UVR|1|1a|A|1183
8UVR|1|1a|G|1184
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1b
- 30S ribosomal protein S2
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
Coloring options: