J3_8UVS_015

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_015 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.4786

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UVS|1|1a|G|1002
8UVS|1|1a|G|1003
8UVS|1|1a|A|1004
8UVS|1|1a|A|1005
8UVS|1|1a|C|1006
*
8UVS|1|1a|G|1023
8UVS|1|1a|G|1024
8UVS|1|1a|U|1025
8UVS|1|1a|G|1026
8UVS|1|1a|C|1027
8UVS|1|1a|C|1028
*
8UVS|1|1a|G|1033
8UVS|1|1a|G|1034
8UVS|1|1a|A|1035
8UVS|1|1a|G|1036
8UVS|1|1a|C|1037
8UVS|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains