J3_8UVS_024

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CUCAG*CGGAGAG*UAGAAG

Length

18 nucleotides

Bulged bases

8UVS|1|2A|G|2334, 8UVS|1|2A|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UVS|1|2A|C|2295
8UVS|1|2A|U|2296
8UVS|1|2A|C|2297
8UVS|1|2A|A|2298
8UVS|1|2A|G|2299
*
8UVS|1|2A|C|2317
8UVS|1|2A|G|2318
8UVS|1|2A|G|2319
8UVS|1|2A|A|2320
8UVS|1|2A|G|2321
8UVS|1|2A|A|2322
8UVS|1|2A|G|2323
*
8UVS|1|2A|U|2332
8UVS|1|2A|A|2333
8UVS|1|2A|G|2334
8UVS|1|2A|A|2335
8UVS|1|2A|A|2336
8UVS|1|2A|G|2337

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2B

5S ribosomal RNA; 5S rRNA

Chain 2G

50S ribosomal protein L5

Chain 2S

50S ribosomal protein L18

Chain 2x

Transfer RNA; tRNA