J3_8UVS_029

3D structure

PDB id

8UVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

8UVS|1|2a|A|975, 8UVS|1|2a|G|976, 8UVS|1|2a|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UVS_029 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.1093

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UVS|1|2a|U|955
8UVS|1|2a|U|956
8UVS|1|2a|U|957
8UVS|1|2a|A|958
8UVS|1|2a|A|959
8UVS|1|2a|U|960
8UVS|1|2a|U|961
8UVS|1|2a|C|962
*
8UVS|1|2a|G|973
8UVS|1|2a|A|974
8UVS|1|2a|A|975
8UVS|1|2a|G|976
8UVS|1|2a|A|977
8UVS|1|2a|A|978
8UVS|1|2a|C|979
8UVS|1|2a|C|980
8UVS|1|2a|U|981
8UVS|1|2a|U|982
8UVS|1|2a|A|983
8UVS|1|2a|C|984
*
8UVS|1|2a|G|1221
8UVS|1|2a|G|1222
8UVS|1|2a|C|1223
8UVS|1|2a|G|1224
8UVS|1|2a|A|1225

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2j

30S ribosomal protein S10

Chain 2m

30S ribosomal protein S13

Chain 2n

30S ribosomal protein S14 type Z

Chain 2s

30S ribosomal protein S19

Chain 2w

Transfer RNA; tRNA