3D structure

PDB id
8UVS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with spectinomycin derivative 2694, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.75A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.75 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
8UVS|1|1A|A|2388, 8UVS|1|1A|U|2390, 8UVS|1|1A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8UVS_043 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.059
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04772.1
Basepair signature
cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
8

Unit IDs

8UVS|1|1A|G|2282
8UVS|1|1A|C|2283
8UVS|1|1A|C|2284
*
8UVS|1|1A|G|2384
8UVS|1|1A|C|2385
8UVS|1|1A|C|2386
8UVS|1|1A|U|2387
8UVS|1|1A|A|2388
8UVS|1|1A|G|2389
8UVS|1|1A|U|2390
8UVS|1|1A|G|2391
8UVS|1|1A|A|2392
8UVS|1|1A|A|2393
8UVS|1|1A|C|2394
8UVS|1|1A|C|2395
*
8UVS|1|1A|G|2421
8UVS|1|1A|A|2422
8UVS|1|1A|U|2423
8UVS|1|1A|C|2424
8UVS|1|1A|A|2425
8UVS|1|1A|A|2426
8UVS|1|1A|C|2427

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 11
50S ribosomal protein L28
Chain 16
50S ribosomal protein L33
Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15
Chain 1y
Transfer RNA; tRNA

Coloring options:


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