J3_8UXA_014
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUA*UAA*UAUAAC
- Length
- 12 nucleotides
- Bulged bases
- 8UXA|1|A|U|2600, 8UXA|1|A|A|2602
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_014 not in the Motif Atlas
- Geometric match to J3_4V9F_008
- Geometric discrepancy: 0.1764
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UXA|1|A|G|2445
8UXA|1|A|U|2446
8UXA|1|A|A|2447
*
8UXA|1|A|U|2587
8UXA|1|A|A|2588
8UXA|1|A|A|2589
*
8UXA|1|A|U|2598
8UXA|1|A|A|2599
8UXA|1|A|U|2600
8UXA|1|A|A|2601
8UXA|1|A|A|2602
8UXA|1|A|C|2603
Current chains
- Chain A
- Large ribosomal subunit rRNA
Nearby chains
- Chain E
- Large ribosomal subunit protein uL5m
- Chain K
- Large ribosomal subunit protein uL16m
- Chain R
- Large ribosomal subunit protein bL27m
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