J3_8UXA_019

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACAUGAC*GAGGAAUAU*AGU

Length

19 nucleotides

Bulged bases

8UXA|1|AL|A|55, 8UXA|1|AL|G|57, 8UXA|1|AL|A|58

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UXA_019 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1446

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8UXA|1|AL|A|53
8UXA|1|AL|C|54
8UXA|1|AL|A|55
8UXA|1|AL|U|56
8UXA|1|AL|G|57
8UXA|1|AL|A|58
8UXA|1|AL|C|59
*
8UXA|1|AL|G|363
8UXA|1|AL|A|364
8UXA|1|AL|G|365
8UXA|1|AL|G|366
8UXA|1|AL|A|367
8UXA|1|AL|A|368
8UXA|1|AL|U|369
8UXA|1|AL|A|370
8UXA|1|AL|U|371
*
8UXA|1|AL|A|397
8UXA|1|AL|G|398
8UXA|1|AL|U|399

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain r

Small ribosomal subunit protein uS12m

Chain v

Small ribosomal subunit protein bS16m