J3_8UXA_025

3D structure

PDB id

8UXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UAU*AGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8UXA_025 not in the Motif Atlas

Homologous match to J3_6CZR_019

Geometric discrepancy: 0.1411

The information below is about J3_6CZR_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UXA|1|AL|U|1008
8UXA|1|AL|G|1009
8UXA|1|AL|G|1010
8UXA|1|AL|A|1011
*
8UXA|1|AL|U|1267
8UXA|1|AL|A|1268
8UXA|1|AL|U|1269
*
8UXA|1|AL|A|1405
8UXA|1|AL|G|1406
8UXA|1|AL|A|1407
8UXA|1|AL|A|1408

Current chains

Chain AL

Small ribosomal subunit rRNA

Nearby chains

Chain AM

Transfer RNA; tRNA

Chain o

Small ribosomal subunit protein uS9m

Chain s

Small ribosomal subunit protein uS13m