J3_8UXA_026
3D structure
- PDB id
- 8UXA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Glucose treated mitochondrial ribosome of saccharomyces cerevisiae class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GACUAACCUUAC*GGUAA
- Length
- 25 nucleotides
- Bulged bases
- 8UXA|1|AL|C|1040, 8UXA|1|AL|U|1041, 8UXA|1|AL|A|1043
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8UXA_026 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0995
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8UXA|1|AL|U|1020
8UXA|1|AL|U|1021
8UXA|1|AL|U|1022
8UXA|1|AL|A|1023
8UXA|1|AL|A|1024
8UXA|1|AL|U|1025
8UXA|1|AL|U|1026
8UXA|1|AL|C|1027
*
8UXA|1|AL|G|1038
8UXA|1|AL|A|1039
8UXA|1|AL|C|1040
8UXA|1|AL|U|1041
8UXA|1|AL|A|1042
8UXA|1|AL|A|1043
8UXA|1|AL|C|1044
8UXA|1|AL|C|1045
8UXA|1|AL|U|1046
8UXA|1|AL|U|1047
8UXA|1|AL|A|1048
8UXA|1|AL|C|1049
*
8UXA|1|AL|G|1253
8UXA|1|AL|G|1254
8UXA|1|AL|U|1255
8UXA|1|AL|A|1256
8UXA|1|AL|A|1257
Current chains
- Chain AL
- Small ribosomal subunit rRNA
Nearby chains
- Chain p
- Small ribosomal subunit protein uS10m
- Chain s
- Small ribosomal subunit protein uS13m
- Chain t
- 37S ribosomal protein MRP2, mitochondrial
- Chain y
- Small ribosomal subunit protein uS19m
Coloring options: