J3_8V84_001
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8V84|1|1|U|117, 8V84|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8V84_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.2962
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8V84|1|1|C|113
8V84|1|1|A|114
8V84|1|1|A|115
8V84|1|1|A|116
8V84|1|1|U|117
8V84|1|1|U|118
8V84|1|1|U|119
8V84|1|1|G|120
8V84|1|1|A|121
8V84|1|1|A|122
8V84|1|1|A|123
*
8V84|1|1|U|149
8V84|1|1|A|150
8V84|1|1|A|151
8V84|1|1|U|152
8V84|1|1|U|153
8V84|1|1|U|154
8V84|1|1|G|155
8V84|1|1|G|156
8V84|1|1|A|157
8V84|1|1|G|158
*
8V84|1|1|C|263
8V84|1|1|G|264
8V84|1|1|A|265
8V84|1|1|A|266
8V84|1|1|G|267
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- Large ribosomal subunit protein eL8A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain v
- Nucleolar protein 16
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