J3_8V87_003
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UGAAC*GGG*UAAAA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|U|814
8V87|1|1|G|815
8V87|1|1|A|816
8V87|1|1|A|817
8V87|1|1|C|818
*
8V87|1|1|G|907
8V87|1|1|G|908
8V87|1|1|G|909
*
8V87|1|1|U|919
8V87|1|1|A|920
8V87|1|1|A|921
8V87|1|1|A|925
8V87|1|1|A|926
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal subunit assembly/export protein LOC1
- Chain N
- Large ribosomal subunit protein eL15A
- Chain j
- 60S ribosomal protein L37-A
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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