J3_8V87_009
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8V87|1|1|U|117, 8V87|1|1|G|120, 8V87|1|1|A|121, 8V87|1|1|U|147, 8V87|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|C|113
8V87|1|1|A|114
8V87|1|1|A|115
8V87|1|1|A|116
8V87|1|1|U|117
8V87|1|1|U|118
8V87|1|1|U|119
8V87|1|1|G|120
8V87|1|1|A|121
8V87|1|1|A|122
8V87|1|1|A|123
8V87|1|1|U|124
*
8V87|1|1|A|144
8V87|1|1|G|145
8V87|1|1|U|146
8V87|1|1|U|147
8V87|1|1|G|148
8V87|1|1|U|149
8V87|1|1|A|150
8V87|1|1|A|151
8V87|1|1|U|152
8V87|1|1|U|153
8V87|1|1|U|154
8V87|1|1|G|155
8V87|1|1|G|156
8V87|1|1|A|157
8V87|1|1|G|158
*
8V87|1|1|C|263
8V87|1|1|G|264
8V87|1|1|A|265
8V87|1|1|A|266
8V87|1|1|G|267
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- ATP-dependent RNA helicase HAS1
- Chain G
- Large ribosomal subunit protein eL8A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain m
- Ribosome biogenesis protein ERB1
- Chain n
- Pescadillo homolog
- Chain v
- Nucleolar protein 16
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