J3_8V87_023
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 8V87|1|1|A|3172, 8V87|1|1|G|3173, 8V87|1|1|A|3215, 8V87|1|1|G|3216, 8V87|1|1|G|3219, 8V87|1|1|A|3268, 8V87|1|1|U|3270, 8V87|1|1|C|3272
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V87|1|1|U|3171
8V87|1|1|A|3172
8V87|1|1|G|3173
8V87|1|1|A|3174
8V87|1|1|U|3175
8V87|1|1|G|3176
*
8V87|1|1|C|3212
8V87|1|1|A|3213
8V87|1|1|U|3214
8V87|1|1|A|3215
8V87|1|1|G|3216
8V87|1|1|C|3217
8V87|1|1|A|3218
8V87|1|1|G|3219
8V87|1|1|G|3220
*
8V87|1|1|C|3265
8V87|1|1|G|3266
8V87|1|1|A|3267
8V87|1|1|A|3268
8V87|1|1|U|3269
8V87|1|1|U|3270
8V87|1|1|G|3271
8V87|1|1|C|3272
8V87|1|1|A|3273
8V87|1|1|A|3274
8V87|1|1|U|3275
8V87|1|1|G|3276
8V87|1|1|U|3277
8V87|1|1|C|3278
8V87|1|1|A|3279
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- Large ribosomal subunit protein uL13A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: